Electron diffraction to solve crystal structures date back to the earliest days of electron diffraction. The first successful demonstration of MicroED was reported in 2013 by the Gonen laboratory for the structure of lysozyme, a classic test protein in X-ray crystallography.
Detailed protocols for setting up the electron microscope and for data collections have been published.
A variety of detectors have been used to collected electron diffraction data in MicroED experiments. Detectors utilizing charge-coupled device (CCD) and complementary metal–oxide–semiconductor (CMOS) technology have been used. With CMOS detectors, individual electron counts can be interpreted. More recently, direct electron detectors have been successfully used in both linear and counting modes. In these examples electron counting allowed ab initio phasing and visualization of hydrogens in proteins.
The initial proof of concept publication on MicroED used lysozyme crystals. Up to 90 degrees of data were collected from a single nano crystal, with discrete 1 degree steps between frames. Each diffraction pattern was collected with an ultra-low dose rate of ~0.01 e−/Å2/s. Data from 3 crystals was merged to yield a 2.9Å resolution structure with good refinement statistics, enabling determination of the structure of a dose-sensitive protein from 3D microcrystals in cryogenic conditions.
MicroED uses continuous rotation during the data collection scheme. Here the crystal is slowly rotated in a single direction while diffraction is recorded on a fast camera as a movie. This led to several improvements in data quality and allowed data processing using standard X-ray crystallographic software. Continuous rotation MicroED improves sampling of reciprocal space.
Detailed protocols for MicroED data processing have been published. When MicroED data is collected using continuous stage rotation, standard crystallography software can be used.
Other electron diffraction methods that have been developed and demonstrated to work include Automated Diffraction Tomography (ADT) and Rotation Electron Diffraction (RED). These methods differ slightly from MicroED: In ADT discrete steps of goniometer tilt are used to cover reciprocal space in combination with beam precession to reduce dynamical diffraction effects. ADT uses hardware and software for precession and scanning transmission electron microscopy for crystal tracking. RED is done in TEM but the goniometer is tilted in discrete steps and beam tilting is used to fill in the gaps. Software is used to process ADT and RED data.
MicroED has been used to determine the structures of large globular proteins, small proteins, peptides, membrane proteins, organic molecules, and inorganic compounds. In many of these examples hydrogens and charged ions were observed.
The first structures solved by MicroED were published in late 2015. These structures were of peptide fragments that form the toxic core of α-synculein, the protein responsible for Parkinson's disease and lead to insight into the aggregation mechanism toxic aggregates. The structures were solved at 1.4 Å resolution.
The first novel structure of a protein solved by MicroED was published in 2019. The protein is the metalloenzyme R2-like ligand-binding oxidase (R2lox) from Sulfolobus acidocaldarius. The structure was solved at 3.0 Å resolution by molecular replacement using a model of 35% sequence identity built from the closest homolog with a known structure.
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See also https://www.gatan.com/ccd-vs-cmos and https://www.gatan.com/techniques/imaging. https://www.gatan.com/ccd-vs-cmos
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Nannenga, Brent L; Shi, Dan; Leslie, Andrew G W; Gonen, Tamir (2014-08-03). "High-resolution structure determination by continuous-rotation data collection in MicroED". Nature Methods. 11 (9): 927–930. doi:10.1038/nmeth.3043. ISSN 1548-7091. PMC 4149488. PMID 25086503. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4149488
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Liu, S.; Gonen, T. (2018-09-12). "MicroED structure of NaK ion channel reveals a process of Na+ partition into the selectivity filter". doi:10.2210/pdb6cpv/pdb. S2CID 240183721. {{cite journal}}: Cite journal requires |journal= (help) /wiki/Doi_(identifier)
Rodriguez, J.A.; Ivanova, M.; Sawaya, M.R.; Cascio, D.; Reyes, F.; Shi, D.; Johnson, L.; Guenther, E.; Sangwan, S. (2015-09-09). "MicroED structure of the segment, GVVHGVTTVA, from the A53T familial mutant of Parkinson's disease protein, alpha-synuclein residues 47-56". doi:10.2210/pdb4znn/pdb. {{cite journal}}: Cite journal requires |journal= (help) /wiki/Doi_(identifier)
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