The Recombination detection program (RDP) is a computer program used to analyse nucleotide sequence data and identify evidence of genetic recombination. Besides applying a large number of different recombination detection methods it also implements various phylogenetic tree construction methods and recombination hotspot tests. The latest version is RDP4.
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References
Martin, Darren P; Murrell, Ben; Golden, Michael; Khoosal, Arjun; Muhire, Brejnev (2015). "RDP4: Detection and analysis of recombination patterns in virus genomes". Virus Evolution. 1 (1): vev003. doi:10.1093/ve/vev003. PMC 5014473. PMID 27774277. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5014473 ↩