The Bioinformatics Open Source Conference (BOSC) is an academic conference on open-source programming and other open science practices in bioinformatics, organised by the Open Bioinformatics Foundation. The conference has been held annually since 2000 and is run as a two-day meeting either within Intelligent Systems for Molecular Biology (ISMB) conference or as a joint conference with the Galaxy community.
Program
The conference is held as a single track consisting of presentations, poster sessions and two keynote talks by people of influence in open-source bioinformatics.1
Since 2010, an informal two-day "CollaborationFest" (formerly Codefest) has been held directly preceding the conference.23
History
National Institutes of Health Associate Director for Data Science Philip Bourne and C. Titus Brown gave keynote talks at BOSC 2014.4
BOSC 2016 was organized in Orlando, Florida from July 8–9 before the main ISMB conference.5
In 2018 and 2020, BOSC partnered with Galaxy to organize two joint conferences called GCCBOSC and Bioinformatics Community Conference (BCC) respectively.6 The event in 2018 was held in Portland, Oregon.7 The BCC in 2020 took place online with two time schedules for eastern/western time zones8
Since 2021, BOSC has been taking place within the ISMB conferences again. In 2023 BOSC took place in Lyon, France between July 24-28 as part of the ISMB/ECCB conference.
Past conferences
As of January 2024, there have been 24 BOSC held around the world, of those 20 were purely in-person conferences, 2 purely remote due to the COVID-19 pandemic and one that was organized as a hybrid meeting.9
| Year | Conference partner | Location | Keynote speakers |
|---|---|---|---|
| 2023 | ISMB | Lyon, France | Joseph M. Yracheta, Sara El-Gebali |
| 2022 | ISMB | Hybrid: Madison, WI and online | Jason Williams, Melissa Haendel |
| 2021 | ISMB | Online (would have been Lyon) | Christie Bahlai, Lara Mangravite, Thomas Hervé Mboa Nkoudou |
| 2020 | GCC | Online (would have been Toronto) | Lincoln Stein, Abigail Cabunoc Mayes |
| 2019 | ISMB | Basel, Switzerland | Nicola Mulder |
| 2018 | GCC | Portland, OR | Fernando Pérez, Tracy Teal |
| 2017 | ISMB | Prague, Czech Republic | Mad Price Ball, Nick Loman |
| 2016 | ISMB | Orlando, FL | Jennifer Gardy, Steven Salzberg |
| 2015 | ISMB | Dublin, Ireland | Ewan Birney, Holly Bik |
| 2014 | ISMB | Boston, MA | Philip Bourne, Titus Brown |
| 2013 | ISMB | Berlin, Germany | Sean Eddy, Cameron Neylon |
| 2012 | ISMB | Long Beach, CA | Jonathan Eisen, Carole Goble |
| 2011 | ISMB | Vienna, Austria | Lawrence Hunter, Matt Wood |
| 2010 | ISMB | Boston, MA | Guy Coates, Ross Gardler |
| 2009 | ISMB | Stockholm, Sweden | Robert Hanmer, Alan Ruttenberg |
| 2008 | ISMB | Toronto, Canada | Julian Lombardi |
| 2007 | ISMB | Vienna, Austria | Carole Goble |
| 2006 | ISMB | Fortaleza, Brasil | Amos Bairoch, Alberto M.R. Davila |
| 2005 | ISMB | Detroit, MI | Hilmar Lapp |
| 2004 | ISMB | Glasgow, Scotland | Wolfgang Huber |
| 2003 | ISMB | Brisbane, Australia | - |
| 2002 | ISMB | Edmonton, Canada | Ewan Birney, Michael Eisen, Winston Hide |
| 2001 | ISMB | Copenhagen, Denmark | Steven Brenner |
| 2000 | ISMB | San Diego, CA | Tim O'Reilly, Lincoln Stein |
References
Harris, N. L.; Cock, P.; Chapman, B.; Goecks, J.; Hotz, H.-R.; Lapp, H. (July 14, 2014). "The Bioinformatics Open Source Conference (BOSC) 2013". Bioinformatics. 31 (2): 299–300. doi:10.1093/bioinformatics/btu413. PMC 4287938. PMID 25024288. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4287938 ↩
"Codefest - Open Bioinformatics Foundation". www.open-bio.org. Retrieved July 20, 2014. http://www.open-bio.org/wiki/Codefest ↩
Möller, Steffen; Afgan, Enis; Banck, Michael; Cock, Peter J. A.; Kalas, Matus; Kajan, Laszlo; Prins, Pjotr; Quinn, Jacqueline; Sallou, Olivier; Strozzi, Francesco; Seemann, Torsten; Tille, Andreas; Valls Guimera, Roman; Katayama, Toshiaki; Chapman, Brad (October 14, 2013). "Sprints, Hackathons and Codefests as community gluons in computational biology". EMBnet.journal. 19 (B): 40. doi:10.14806/ej.19.B.726. https://doi.org/10.14806%2Fej.19.B.726 ↩
"BOSC 2014 Schedule - Open Bioinformatics Foundations". www.open-bio.org. Retrieved July 20, 2014. http://www.open-bio.org/wiki/BOSC_2014_Schedule ↩
"BOSC 2016 – Open Bioinformatics Foundation". Open Bio. https://www.open-bio.org/wiki/BOSC_2016 ↩
"About BOSC - Open Bioinformatics Foundation". Retrieved November 22, 2022. https://www.open-bio.org/events/bosc-2021/about/#Past_BOSCs ↩
"GCCBOSC 2018 - Open Bioinformatics Foundation". Retrieved November 22, 2022. https://www.open-bio.org/2018/07/27/gccbosc-2018-post-meeting-report/ ↩
"Bioinformatics Community Conference". Retrieved November 22, 2022. https://bcc2020.github.io/ ↩
"OBF » About BOSC » About BOSC". Retrieved November 23, 2022. https://www.open-bio.org/events/bosc-2021/about/ ↩