BioJava

<p>BioJava is an <a href="/facts/Open-source_software/HzTaB8E9">open-source software</a> project dedicated to providing <a href="/facts/Java_(software_platform)/fpn6x8WL">Java</a> tools for processing <a href="/facts/Biology/1M1ee3pB">biological</a> data. BioJava is a set of <a href="/facts/Library_(computing)/xRzL3P7q">library</a> functions written in the programming language <a href="/facts/Java_(programming_language)/9ScgFyAL">Java</a> for manipulating sequences, protein structures, file parsers, <a href="/facts/Common_Object_Request_Broker_Architecture/VUDlTHs5">Common Object Request Broker Architecture</a> (CORBA) interoperability, Distributed Annotation System (DAS), access to <a href="/facts/AceDB/MW7SMv0k">AceDB</a>, dynamic programming, and simple statistical routines. BioJava supports a range of data, starting from DNA and protein sequences to the level of 3D protein structures. The BioJava libraries are useful for automating many daily and mundane <a href="/facts/Bioinformatics/D5x2L8ee">bioinformatics</a> tasks such as to parsing a <a href="/facts/Protein_Data_Bank/oUhq4ABD">Protein Data Bank</a> (PDB) file, interacting with Jmol and many more. This <a href="/facts/Application_programming_interface/GMlN4vUr">application programming interface</a> (API)  provides various file parsers, data models and algorithms to facilitate working with the standard data formats and enables rapid application development and analysis.
</p><p>Additional projects from BioJava include rcsb-sequenceviewer, biojava-http, biojava-spark, and rcsb-viewers.
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BioJava open-in-new

BioJava