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List of Drosophila databases
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<h2 id="droid">DroID</h2> <p>The Drosophila Interactions Database (DroID) is an online database of <i>Drosophila</i> gene and protein interactions.<a class="footnote-ref" id="fnref:1" href="#fn:1"><sup>1</sup></a> It was developed by Russell L. Finley's laboratory at <a href="/facts/Wayne_State_University_School_of_Medicine/QVa6GnBW">Wayne State University School of Medicine</a> in 2008 and has been funded by the <a href="/facts/National_Human_Genome_Research_Institute/t007yxfS">National Human Genome Research Institute</a>, National Institutes of Health's National Center for Research Resources, Michigan Proteome Consortium, and Wayne State University.<a class="footnote-ref" id="fnref:2" href="#fn:2"><sup>2</sup></a><a class="footnote-ref" id="fnref:3" href="#fn:3"><sup>3</sup></a> </p> <h2 id="flybase">FlyBase</h2> <p><a href="/facts/FlyBase/23EKKvl3">FlyBase</a> is the major online database for scientists who work on <i>Drosophila</i>.<a class="footnote-ref" id="fnref:4" href="#fn:4"><sup>4</sup></a> It contains genome data for various <i>Drosophila</i> species, gene annotations, gene function predictions, and a variety of experimental data that can be overlaid over the genome.<a class="footnote-ref" id="fnref:5" href="#fn:5"><sup>5</sup></a> FlyBase was developed in 1992 by <a href="/facts/Michael_Ashburner/G3Rp4QFk">Michael Ashburner</a> at the <a href="/facts/University_of_Cambridge/0la7aX9o">University of Cambridge</a>, but is now run by a consortium of groups from <a href="/facts/Harvard_University/Lhy9L1cx">Harvard University</a>, University of Cambridge, <a href="/facts/Indiana_University/TELCwWYK">Indiana University</a>, and the <a href="/facts/University_of_New_Mexico/7KnmajYB">University of New Mexico</a>.<a class="footnote-ref" id="fnref:6" href="#fn:6"><sup>6</sup></a><a class="footnote-ref" id="fnref:7" href="#fn:7"><sup>7</sup></a> </p> <h2 id="flyfactorsurvey">FlyFactorSurvey</h2> <p>FlyFactorSurvey is a database of <i>Drosophila</i> <a href="/facts/Transcription_factor/wro0DPHe">transcription factors</a> determined using the <a href="/facts/Bacterial_one-hybrid_system/TaEfc05P">bacterial one-hybrid system</a>.<a class="footnote-ref" id="fnref:8" href="#fn:8"><sup>8</sup></a> It was developed by the laboratories of Michael H. Brodsky and Scot Wolfe at the <a href="/facts/University_of_Massachusetts_Medical_School/mG9TUYF6">University of Massachusetts Medical School</a> in 2011, and was funded by the <a href="/facts/National_Human_Genome_Research_Institute/t007yxfS">National Human Genome Research Institute</a><a class="footnote-ref" id="fnref:9" href="#fn:9"><sup>9</sup></a> </p> <h2 id="flymine">FlyMine</h2> <p>FlyMine is a database of transcription, protein expression, and other protein data for <i>Drosophila</i> and <i><a href="/facts/Anopheles/SoWzqURV">Anopheles</a></i> species.<a class="footnote-ref" id="fnref:10" href="#fn:10"><sup>10</sup></a> It was originally developed by Gos Micklem's group at <a href="/facts/Cambridge_University/0la7aX9o">Cambridge University</a> in 2007.<a class="footnote-ref" id="fnref:11" href="#fn:11"><sup>11</sup></a> FlyMine is funded primarily by <a href="/facts/Wellcome_Trust/fBtPWxvj">Wellcome Trust</a>, with elements of the database supported by the <a href="/facts/National_Human_Genome_Research_Institute/t007yxfS">National Human Genome Research Institute</a> and the <a href="/facts/Biotechnology_and_Biological_Sciences_Research_Council/vxtxKH5b">Biotechnology and Biological Sciences Research Council</a>.<a class="footnote-ref" id="fnref:12" href="#fn:12"><sup>12</sup></a> </p> <h2 id="onthefly">OnTheFly</h2> <p>OnTheFly is a database of <i>D. melanogaster</i> transcription factors and the DNA sequences they bind.<a class="footnote-ref" id="fnref:13" href="#fn:13"><sup>13</sup></a><a class="footnote-ref" id="fnref:14" href="#fn:14"><sup>14</sup></a> It was developed by the laboratory of <a href="/facts/Barry_Honig/3peK3y31">Barry Honig</a> at <a href="/facts/Columbia_University_Medical_School/V3H2XKGE">Columbia University Medical School</a> in 2013.<a class="footnote-ref" id="fnref:15" href="#fn:15"><sup>15</sup></a> </p> <h2 id="redfly">REDfly</h2> <p>REDfly (Regulatory Element Database) is a database of <i>Drosophila</i> <a href="/facts/Cis-regulatory_element/q6u6VSBs">cis-regulatory elements</a>.<a class="footnote-ref" id="fnref:16" href="#fn:16"><sup>16</sup></a> It was developed by the laboratory of Marc S. Halfon at the <a href="/facts/University_of_Buffalo/gbIhPu11">University of Buffalo</a> in 2006, and has been funded by the <a href="/facts/National_Science_Foundation/FlDT8TbW">National Science Foundation</a> and the <a href="/facts/National_Institute_of_General_Medical_Sciences/qPdnGH8Y">National Institute of General Medical Sciences</a>.<a class="footnote-ref" id="fnref:17" href="#fn:17"><sup>17</sup></a> </p> <h2 id="references">References</h2> <ol> <li id="fn:1"><p>"DroID - The Drosophila Interactions Database". Retrieved 10 July 2019. <a href="http://droidb.org/Index.jsp" target="_blank">http://droidb.org/Index.jsp</a> <a href="#fnref:1" class="footnote-back-ref">↩</a></p></li> <li id="fn:2"><p>Yu, Jingkai; Pacifico, Svetlana; Liu, Guozhen; Finley Jr, Russell L. (2008). "DroID: The Drosophila Interactions Database, a comprehensive resource for annotated gene and protein interactions". BMC Genomics. 9: 461. doi:10.1186/1471-2164-9-461. PMC 2572628. PMID 18840285. <a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2572628" target="_blank">https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2572628</a> <a href="#fnref:2" class="footnote-back-ref">↩</a></p></li> <li id="fn:3"><p>"About Us". DroID. Retrieved 10 July 2019. <a href="http://droidb.org/AboutUs.jsp" target="_blank">http://droidb.org/AboutUs.jsp</a> <a href="#fnref:3" class="footnote-back-ref">↩</a></p></li> <li id="fn:4"><p>St. Pierre, Susan; McQuilton, Peter (2009). "Inside Fly Base: Biocuration as a career". Fly. 3 (1): 112–114. doi:10.4161/fly.3.1.7769. PMC 2837272. PMID 19182544. <a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2837272" target="_blank">https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2837272</a> <a href="#fnref:4" class="footnote-back-ref">↩</a></p></li> <li id="fn:5"><p>Thurmond, Jim; Goodman, Joshua L.; Strelets, Victor B.; Attrill, Helen; Gramates, L Sian; Marygold, Steven J.; Matthews, Beverley B.; Millburn, Gillian; Antonazzo, Giulia; Trovisco, Vitor; Kaufman, Thomas C.; Calvi, Brian R.; Perrimon, Norbert; Gelbart, Susan Russo; Agapite, Julie; Broll, Kris; Crosby, Lynn; Santos, Gilberto dos; Emmert, David; Gramates, L. Sian; Falls, Kathleen; Jenkins, Victoria; Matthews, Beverley; Sutherland, Carol; Tabone, Christopher; Zhou, Pinglei; Zytkovicz, Mark; Brown, Nick; Antonazzo, Giulia; et al. (2019). "Fly Base 2.0: The next generation". Nucleic Acids Research. 47 (D1): D759 – D765. doi:10.1093/nar/gky1003. PMC 6323960. PMID 30364959. <a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6323960" target="_blank">https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6323960</a> <a href="#fnref:5" class="footnote-back-ref">↩</a></p></li> <li id="fn:6"><p>"FlyBase:About". Retrieved 10 July 2019. <a href="https://wiki.flybase.org/wiki/FlyBase:About#FlyBase_Consortium" target="_blank">https://wiki.flybase.org/wiki/FlyBase:About#FlyBase_Consortium</a> <a href="#fnref:6" class="footnote-back-ref">↩</a></p></li> <li id="fn:7"><p>Thurmond, Jim; Goodman, Joshua L.; Strelets, Victor B.; Attrill, Helen; Gramates, L Sian; Marygold, Steven J.; Matthews, Beverley B.; Millburn, Gillian; Antonazzo, Giulia; Trovisco, Vitor; Kaufman, Thomas C.; Calvi, Brian R.; Perrimon, Norbert; Gelbart, Susan Russo; Agapite, Julie; Broll, Kris; Crosby, Lynn; Santos, Gilberto dos; Emmert, David; Gramates, L. Sian; Falls, Kathleen; Jenkins, Victoria; Matthews, Beverley; Sutherland, Carol; Tabone, Christopher; Zhou, Pinglei; Zytkovicz, Mark; Brown, Nick; Antonazzo, Giulia; et al. (2019). "Fly Base 2.0: The next generation". Nucleic Acids Research. 47 (D1): D759 – D765. doi:10.1093/nar/gky1003. PMC 6323960. PMID 30364959. <a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6323960" target="_blank">https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6323960</a> <a href="#fnref:7" class="footnote-back-ref">↩</a></p></li> <li id="fn:8"><p>Zhu, Lihua Julie; Christensen Ryan G; Kazemian Majid; Hull Christopher J; Enuameh Metewo Selase; Basciotta Matthew D; Brasefield Jessie A; Zhu Cong; Asriyan Yuna; Lapointe David S; Sinha Saurabh; Wolfe Scot A; Brodsky Michael H (Jan 2011). "FlyFactorSurvey: a database of Drosophila transcription factor binding specificities determined using the bacterial one-hybrid system". Nucleic Acids Res. 39 (Database issue). England: D111-7. doi:10.1093/nar/gkq858. PMC 3013762. PMID 21097781. <a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3013762" target="_blank">https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3013762</a> <a href="#fnref:8" class="footnote-back-ref">↩</a></p></li> <li id="fn:9"><p>"FlyFactorSurvey Homepage". UMass. Retrieved 10 July 2019. <a href="http://mccb.umassmed.edu/ffs/" target="_blank">http://mccb.umassmed.edu/ffs/</a> <a href="#fnref:9" class="footnote-back-ref">↩</a></p></li> <li id="fn:10"><p>"About FlyMine". 2014-11-17. Retrieved 10 July 2019. <a href="https://intermineorg.wordpress.com/flymine/about/" target="_blank">https://intermineorg.wordpress.com/flymine/about/</a> <a href="#fnref:10" class="footnote-back-ref">↩</a></p></li> <li id="fn:11"><p>Lyne, Rachel; Smith, Richard; Rutherford, Kim; Wakeling, Matthew; Varley, Andrew; Guillier, Francois; Janssens, Hilde; Ji, Wenyan; McLaren, Peter; North, Philip; Rana, Debashis; Riley, Tom; Sullivan, Julie; Watkins, Xavier; Woodbridge, Mark; Lilley, Kathryn; Russell, Steve; Ashburner, Michael; Mizuguchi, Kenji; Micklem, Gos (2007). "Fly Mine: An integrated database for Drosophila and Anopheles genomics". Genome Biology. 8 (7): R129. doi:10.1186/gb-2007-8-7-r129. PMC 2323218. PMID 17615057. <a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2323218" target="_blank">https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2323218</a> <a href="#fnref:11" class="footnote-back-ref">↩</a></p></li> <li id="fn:12"><p>"FlyMine". Retrieved 10 July 2019. <a href="http://www.flymine.org/" target="_blank">http://www.flymine.org/</a> <a href="#fnref:12" class="footnote-back-ref">↩</a></p></li> <li id="fn:13"><p>Shazman, Shula; Lee, Hunjoong; Socol, Yakov; Mann, Richard S.; Honig, Barry (2014). "OnTheFly: A database of Drosophila melanogaster melanogastertranscription factors and their binding sites". Nucleic Acids Research. 42 (Database issue): D167 – D171. doi:10.1093/nar/gkt1165. PMC 3965123. PMID 24271386. <a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3965123" target="_blank">https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3965123</a> <a href="#fnref:13" class="footnote-back-ref">↩</a></p></li> <li id="fn:14"><p>"OnTheFly Homepage". Honig Lab. Retrieved 10 July 2019. <a href="https://bhapp.c2b2.columbia.edu/OnTheFly/index.php" target="_blank">https://bhapp.c2b2.columbia.edu/OnTheFly/index.php</a> <a href="#fnref:14" class="footnote-back-ref">↩</a></p></li> <li id="fn:15"><p>Shazman, Shula; Lee, Hunjoong; Socol, Yakov; Mann, Richard S.; Honig, Barry (2014). "OnTheFly: A database of Drosophila melanogaster melanogastertranscription factors and their binding sites". Nucleic Acids Research. 42 (Database issue): D167 – D171. doi:10.1093/nar/gkt1165. PMC 3965123. PMID 24271386. <a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3965123" target="_blank">https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3965123</a> <a href="#fnref:15" class="footnote-back-ref">↩</a></p></li> <li id="fn:16"><p>Rivera, John; Keränen, Soile V E; Gallo, Steven M.; Halfon, Marc S. (2019). "REDfly: The transcriptional regulatory element database for Drosophila". Nucleic Acids Research. 47 (D1): D828 – D834. doi:10.1093/nar/gky957. PMC 6323911. PMID 30329093. <a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6323911" target="_blank">https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6323911</a> <a href="#fnref:16" class="footnote-back-ref">↩</a></p></li> <li id="fn:17"><p>"REDfly About Us". REDfly. Retrieved 10 July 2019. <a href="http://redfly.ccr.buffalo.edu/aboutus.php" target="_blank">http://redfly.ccr.buffalo.edu/aboutus.php</a> <a href="#fnref:17" class="footnote-back-ref">↩</a></p></li> </ol>